Torres is stranded on a bronze-age planet after a crash in the Delta Flyer, where she helps a playwright adapt the story of Voyager to the stage. Also, Kim is missing in an escape pod.
A much older and more powerful Kes returns to Voyager, and attempts to travel back in time to change her history.
The Doctor's creator, Lewis Zimmerman, is dying in the Alpha Quadrant from a disease similar to the Vidiian phage. The Doctor's matrix is transferred to Zimmerman's lab on the Jupiter station, to assist Mr. Barclay and Counsellor Troi in attempting to treat the illness.
As Voyager travels through a nebula all ship's power is turned off, giving Neelix an opportunity to tell the Borg children a ghost story.
Janeway, B'Elanna and Tuvok infiltrate a Borg Cube in an attempt to save Borg drones who are trying to develop individuality.
Janeway, B'Elanna and Tuvok are assimilated by the Borg while attempting to save the group of drones who have developed individuality.
When her cortical implant malfunctions, Seven of Nine needs a life-saving transplant.
The crew of Voyager enter the Delta Flyer in a sub-warp race, crewed by Tom Paris and B'Elanna Torres, and events conspire to encourage Tom to propose to her.
Ex-Maquis crew members are attacked after a data stream arrives from Starfleet.
The Doctor's program is stolen and he is forced to work in an alien hospital, where he skillfully manipulates the system to provide ethical medical care.
A hologram of Reginald Barclay is sent to Voyager, supposedly to implement a dangerous plan to bring them home; but the hologram has been tampered with by some Ferengi, who are trying to steal valuable Borg nanoprobes from Seven of Nine.
During an emergency on a mission, The Doctor is forced to upload his program into Seven of Nine's Borg implants, allowing him to experience real sensations for the first time.
Harry Kim takes command of an alien ship which has lost its officers in an attack.
Voyager's hologram technology, which Janeway had previously donated to the Hirogen, has been modified to make the holographic "prey" more cunning, enabling the hologram characters to rebel against their new masters.
The Doctor decides to join the holograms who have escaped from the Hirogen, but in the process he must betray Voyager.
Voyager is fractured into several time periods by an accident, and only Chakotay is able to move between them, in the process meeting old friends and old foes from the previous six seasons.
Now married to Tom Paris, B'Elanna Torres discovers she is pregnant. The Doctor tells her to expect a daughter; but B'Elanna's unresolved fear of the childhood traumas which she suffered as a part-Klingon girl growing up among humans makes her determined to remove her child's Klingon DNA.
Prisoners are brought onto Voyager from a damaged alien vessel, and the crew must deliver them to their destination - for execution!
Voyager encounters an ancient Klingon battlecruiser. The Klingons aboard it had set out long ago to find their savior, and they believe it to be Tom and B'Elanna's unborn child.
Voyager is pulled into a void, where the ships which have become trapped attack each other for food and resources.