I can't speak for the administration here, but I'm of the opinion that there is a difference between blanket condemnation of a belief system and criticizing or opposing it's individual tenants. There is also a difference between the aforementioned and degrading the individual or group of individuals who believe a certain way.
It is fine, in my personal opinion, to voice opposition of inhumane or morally bankrupt doctrines so long as it is in an effort to help enlighten and enhance the lives of those who ascribe to such beliefs or are affected by them, with respect to those who believe them.
Let us be mindful not to overreach ourselves in condemnation. Almost every religion, while they may have their dark spots, serves a purpose in the world, and perhaps more importantly, the lives of the people who adhere to it. Christianity as an example, for all it's missteps and the way it has polarized the issue of homosexuality, regardless of denomination, still contains beautiful meaning and history.
That said, I feel the most important thing in the context of this discussion, is to ensure that criticism does not become personalized. You do not necessarily have to respect the beliefs, but respect the humanity of the individual or groups that adhere to them, their freedom of choice, reasoning, personal experience and identity. And yes, that means having a certain sensitivity to how they might perceive criticism towards their strongly held beliefs.
As one who clearly understands the malleability of human consciousness, let us be mindful that should we have walked a lifetime in another's shoes, we would believe the same things they do. "Bad" beliefs are the construct of ignorance, and there are no "evil people", only unfortunate circumstances in which they are raised. We are one in that regard, so treat each-other as we would ourselves, opposing doctrines, not people, with temperance, patience, and sensitivity, towards the goal of shared enlightenment through the dissolution of ignorance.
I am not saying that this has been violated, but I hope it offers clarity in regards to your question and will set the tone for a more peaceful discussion of such fiery issues.